Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
LGG rs10158857 chr1:204160420 C/T 1.86E-5 507 22.58 24.77 7.18 KM Plot
LGG rs10159075 chr1:204160370 A/G 1.86E-5 507 22.58 24.77 7.18 KM Plot
LGG rs10195992 chr2:40336640 C/T 1.4E-5 509 7.13 20.77 23.53 KM Plot
LGG rs1048407 chr7:150107737 C/T 5.31E-5 509 20.9 24.93 21.1 KM Plot
LGG rs10490727 chr2:10517508 G/T 1.08E-6 502 23.53 21.7 5.2 KM Plot
LGG rs10491795 chr9:24113907 C/T 6.12E-14 509 24.07 16.35 10.38 KM Plot
LGG rs10508208 chr10:910983 C/T 2.19E-10 509 21.85 24.15 13.8 KM Plot
LGG rs10516066 chr5:168991663 G/A 1.52E-8 508 22.37 23.85 6.83 KM Plot
LGG rs10516067 chr5:169019147 C/G 1.65E-8 506 21.87 23.85 6.83 KM Plot
LGG rs1059006 chr7:20705278 C/T 1.97E-5 489 23.92 21 14.37 KM Plot
LGG rs10741128 chr10:27411509 G/A 7.67E-5 507 19.15 20.43 24.53 KM Plot
LGG rs10775286 chr16:8710285 G/A 2.17E-7 502 8.17 17.2 24.05 KM Plot
LGG rs10775287 chr16:8710330 G/A 2.17E-7 502 8.17 17.2 24.05 KM Plot
LGG rs10775288 chr16:8710540 T/C 2.17E-7 502 8.17 17.2 24.05 KM Plot
LGG rs10775289 chr16:8710592 A/C 2.17E-7 502 8.17 17.2 24.05 KM Plot